Soil Microbiology

About this course

Expected learning outcomes

Upon completion of this course each student will be able to:

– understand the importance of microorganisms in the soil and to be informed about the latest developments in soil microbiology.

– understand the contribution of microorganisms to soil fertility and to understand the factors responsible for soil health and to learn how to keep soils healthy in the context of sustainable agriculture.

– οbtain useful information on the taxonomic, physiological and environmental aspects of soil microorganisms.

– understand the role of microbial populations in the soil, such as the decomposition of dead organic matter, soil enrichment with nutrients, increasing water penetration, improving soil texture, etc.

– gain knowledge about soil microorganisms that are both harmful and beneficial and how to control and strengthen each, respectively.

– learn the types of interactions that develop between microorganisms (e.g., symbiotic nitrogen fixation, mycorrhiza, competition as well as with other categories of organisms (e.g., plants).

– understand the metabolic processes through which microorganisms affect the productivity, quality and function of the soil ecosystem.

– understand and interpret the agricultural and environmental effects of soil microorganisms in applications such as biological control of phytopathogens, biodegradation and bioremediation of pollutants, etc.

– understand how anthropogenic activities and other factors (e.g. climate change) affect the presence, growth, distribution, abundance and activity of microorganisms in the soil and consequently the functioning of the ecosystem.

– develop skills in the application of techniques and methodologies for the isolation, characterization and identification of soil microorganisms.

– understand and interpret data in the context of soil microbiology as well as develop skills in oral and written presentation of research data and measurements.

– enhance the ability of students to perform their duties as future employees in the fields of Agricultural and Environmental Sciences.

Indicative Syllabus

    The course includes the following major units:

    – Introduction-

    -Historical framework of Soil Microbiology

    -The soil and rhizosphere microbiome. 

    -Soil microorganisms (Bacteria, Ancient, Fungi, Viruses, Primary)

    – Metabolic diversity of soil microorganisms.

    – Microbial metabolism of nitrogen in the soil (ammonization, nitration denitrification), Symbiotic and non-symbiotic nitrogen fixation.

    – Microbial metabolism of sulfur, phosphorus, iron, etc. in the soil

    – Microbial interactions in the soil (symbiosis, competition, etc., bio-communication of microorganisms). Interactions of plants and soil microorganisms (rhizosphere, sperm sphere, bio-communication of plants-microorganisms).

    – Soil microorganisms that promote plant growth and health.

    – Biological control of soil phytopathogenic microorganisms. – Biodegradation and bioremediation of organic pollutants in the soil.

    – Microbiology of degraded / suppressive soils. – Methods for determination and analysis of microbial diversity in the soil.

    – The effects of climate change on soil microbial communities.

    Teaching / Learning Methodology

    Lectures, Lab exercises and/or projects

    Recommended Reading

    Principles and applications of soil microbiology, Third edition, 2021. Edited by Terry J. Gentry, Jeffry J. Fuhrmann, David A. Zuberer, Elsevier Inc.

    Environmental microbiology. 3rd. edition. 2014. Ian L Pepper, Charles P Gerba, Terry J Gentry. Academic Press. Modern Soil Microbiology by Jan Dirk van Elsas (ed.), Jack T. Trevors, 3rd edition, 2019

    Environmental Microbiology. 2009. Raina M. Maier, Ian L. Pepper and Charles P. Gerba. Academic Press.

    Lessons in Environmental Microbiology. 2019. Roger Tim Haug. CRC Press. Taylor & Francis Group. Soil Microbiology, 3rd edition. 2021. Robert L. Tate III, Wiley-Blackwell.

    Soil Microbiology, Ecology and Biochemistry, 4th edition. 2015. Eldor A. Paul. Elsevier Inc. Madigan M.T., Martinko J.M., Parker J. 2018. BROCK: Biology of Microorganisms

    Prerequisites

    Start Date

    TBA

    End Date

    TBA

    Apply

    TBA

    Local Course Code

    0810.6.007.0

    Cycle

    TBA

    Year of study

    TBA

    Language

    English

    Study Load

    5 ECTS

    Mode of delivery

    Written exams and/or project evaluation

    Instructors

    Dr. Anastasia Tampakaki

    Course coordinator

    Dr. Anastasia Tampakaki